RustFungiGenomicsV1, Main, Exploration, bibRecord, 000368

Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

Identifieur interne : 000368 ( Main/Exploration ); précédent : 000367; suivant : 000369

Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

Auteurs : Tri D. Vuong [États-Unis] ; David R. Walker [États-Unis] ; Binh T. Nguyen [Viêt Nam] ; Tuyet T. Nguyen [Viêt Nam] ; Hoan X. Dinh [Viêt Nam] ; David L. Hyten [États-Unis] ; Perry B. Cregan [États-Unis] ; David A. Sleper [États-Unis] ; Jeong D. Lee [États-Unis] ; James G. Shannon [États-Unis] ; Henry T. Nguyen [États-Unis]

Source :

PloS one [ 1932-6203 ] ; 2016.

RBID : pubmed:27935940

Descripteurs français

KwdFr :
- Allèles (MeSH), Cartographie chromosomique (MeSH), Chromosomes de plante (composition chimique), Génome végétal (MeSH), Génotype (MeSH), Locus génétiques (MeSH), Maladies des plantes (génétique), Maladies des plantes (immunologie), Maladies des plantes (microbiologie), Marqueurs génétiques (immunologie), Phakopsora pachyrhizi (pathogénicité), Phakopsora pachyrhizi (physiologie), Polymorphisme de nucléotide simple (MeSH), Répétitions microsatellites (immunologie), Résistance à la maladie (génétique), Soja (génétique), Soja (immunologie), Soja (microbiologie), Spores fongiques (pathogénicité), Spores fongiques (physiologie).
MESH :
- composition chimique : Chromosomes de plante.
- génétique : Maladies des plantes, Résistance à la maladie, Soja.
- immunologie : Maladies des plantes, Marqueurs génétiques, Répétitions microsatellites, Soja.
- microbiologie : Maladies des plantes, Soja.
- pathogénicité : Phakopsora pachyrhizi, Spores fongiques.
- physiologie : Phakopsora pachyrhizi, Spores fongiques.
- Allèles, Cartographie chromosomique, Génome végétal, Génotype, Locus génétiques, Polymorphisme de nucléotide simple.

English descriptors

KwdEn :
- Alleles (MeSH), Chromosome Mapping (MeSH), Chromosomes, Plant (chemistry), Disease Resistance (genetics), Genetic Loci (MeSH), Genetic Markers (immunology), Genome, Plant (MeSH), Genotype (MeSH), Microsatellite Repeats (immunology), Phakopsora pachyrhizi (pathogenicity), Phakopsora pachyrhizi (physiology), Plant Diseases (genetics), Plant Diseases (immunology), Plant Diseases (microbiology), Polymorphism, Single Nucleotide (MeSH), Soybeans (genetics), Soybeans (immunology), Soybeans (microbiology), Spores, Fungal (pathogenicity), Spores, Fungal (physiology).
MESH :
- chemical , immunology : Genetic Markers.
- chemistry : Chromosomes, Plant.
- genetics : Disease Resistance, Plant Diseases, Soybeans.
- immunology : Microsatellite Repeats, Plant Diseases, Soybeans.
- microbiology : Plant Diseases, Soybeans.
- pathogenicity : Phakopsora pachyrhizi, Spores, Fungal.
- physiology : Phakopsora pachyrhizi, Spores, Fungal.
- Alleles, Chromosome Mapping, Genetic Loci, Genome, Plant, Genotype, Polymorphism, Single Nucleotide.

Abstract

Resistance to soybean rust (SBR), caused by Phakopsora pachyrhizi Syd. & Syd., has been identified in many soybean germplasm accessions and is conferred by either dominant or recessive genes that have been mapped to six independent loci (Rpp1 -Rpp6), but No U.S. cultivars are resistant to SBR. The cultivar DT 2000 (PI 635999) has resistance to P. pachyrhizi isolates and field populations from the United States as well as Vietnam. A F6:7 recombinant inbred line (RIL) population derived from Williams 82 × DT 2000 was used to identify genomic regions associated with resistance to SBR in the field in Ha Noi, Vietnam, and in Quincy, Florida, in 2008. Bulked segregant analysis (BSA) was conducted using the soybean single nucleotide polymorphism (SNP) USLP 1.0 panel along with simple sequence repeat (SSR) markers to detect regions of the genome associated with resistance. BSA identified four BARC_SNP markers near the Rpp3 locus on chromosome (Chr.) 6. Genetic analysis identified an additional genomic region around the Rpp4 locus on Chr. 18 that was significantly associated with variation in the area under disease progress curve (AUDPC) values and sporulation in Vietnam. Molecular markers tightly linked to the DT 2000 resistance alleles on Chrs. 6 and 18 will be useful for marker-assisted selection and backcrossing in order to pyramid these genes with other available SBR resistance genes to develop new varieties with enhanced and durable resistance to SBR.

DOI: 10.1371/journal.pone.0164493
PubMed: 27935940
PubMed Central: PMC5147787

Affiliations:

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Le document en format XML

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<author><name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T" last="Nguyen">Henry T. Nguyen</name>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alleles (MeSH)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Plant (chemistry)</term>
<term>Disease Resistance (genetics)</term>
<term>Genetic Loci (MeSH)</term>
<term>Genetic Markers (immunology)</term>
<term>Genome, Plant (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Microsatellite Repeats (immunology)</term>
<term>Phakopsora pachyrhizi (pathogenicity)</term>
<term>Phakopsora pachyrhizi (physiology)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (immunology)</term>
<term>Plant Diseases (microbiology)</term>
<term>Polymorphism, Single Nucleotide (MeSH)</term>
<term>Soybeans (genetics)</term>
<term>Soybeans (immunology)</term>
<term>Soybeans (microbiology)</term>
<term>Spores, Fungal (pathogenicity)</term>
<term>Spores, Fungal (physiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Allèles (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Chromosomes de plante (composition chimique)</term>
<term>Génome végétal (MeSH)</term>
<term>Génotype (MeSH)</term>
<term>Locus génétiques (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (immunologie)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Marqueurs génétiques (immunologie)</term>
<term>Phakopsora pachyrhizi (pathogénicité)</term>
<term>Phakopsora pachyrhizi (physiologie)</term>
<term>Polymorphisme de nucléotide simple (MeSH)</term>
<term>Répétitions microsatellites (immunologie)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Soja (génétique)</term>
<term>Soja (immunologie)</term>
<term>Soja (microbiologie)</term>
<term>Spores fongiques (pathogénicité)</term>
<term>Spores fongiques (physiologie)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="immunology" xml:lang="en"><term>Genetic Markers</term>
</keywords>
<keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Chromosomes, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Chromosomes de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term>
<term>Plant Diseases</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Maladies des plantes</term>
<term>Résistance à la maladie</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Marqueurs génétiques</term>
<term>Répétitions microsatellites</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Microsatellite Repeats</term>
<term>Plant Diseases</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phakopsora pachyrhizi</term>
<term>Spores, Fungal</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phakopsora pachyrhizi</term>
<term>Spores fongiques</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Phakopsora pachyrhizi</term>
<term>Spores fongiques</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Phakopsora pachyrhizi</term>
<term>Spores, Fungal</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Alleles</term>
<term>Chromosome Mapping</term>
<term>Genetic Loci</term>
<term>Genome, Plant</term>
<term>Genotype</term>
<term>Polymorphism, Single Nucleotide</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Allèles</term>
<term>Cartographie chromosomique</term>
<term>Génome végétal</term>
<term>Génotype</term>
<term>Locus génétiques</term>
<term>Polymorphisme de nucléotide simple</term>
</keywords>
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<front><div type="abstract" xml:lang="en">Resistance to soybean rust (SBR), caused by Phakopsora pachyrhizi Syd. & Syd., has been identified in many soybean germplasm accessions and is conferred by either dominant or recessive genes that have been mapped to six independent loci (Rpp1 -Rpp6), but No U.S. cultivars are resistant to SBR. The cultivar DT 2000 (PI 635999) has resistance to P. pachyrhizi isolates and field populations from the United States as well as Vietnam. A F6:7 recombinant inbred line (RIL) population derived from Williams 82 × DT 2000 was used to identify genomic regions associated with resistance to SBR in the field in Ha Noi, Vietnam, and in Quincy, Florida, in 2008. Bulked segregant analysis (BSA) was conducted using the soybean single nucleotide polymorphism (SNP) USLP 1.0 panel along with simple sequence repeat (SSR) markers to detect regions of the genome associated with resistance. BSA identified four BARC_SNP markers near the Rpp3 locus on chromosome (Chr.) 6. Genetic analysis identified an additional genomic region around the Rpp4 locus on Chr. 18 that was significantly associated with variation in the area under disease progress curve (AUDPC) values and sporulation in Vietnam. Molecular markers tightly linked to the DT 2000 resistance alleles on Chrs. 6 and 18 will be useful for marker-assisted selection and backcrossing in order to pyramid these genes with other available SBR resistance genes to develop new varieties with enhanced and durable resistance to SBR.</div>
</front>
</TEI>
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<DateCompleted><Year>2017</Year>
<Month>07</Month>
<Day>05</Day>
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<DateRevised><Year>2018</Year>
<Month>11</Month>
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</DateRevised>
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</PubDate>
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<Title>PloS one</Title>
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<Pagination><MedlinePgn>e0164493</MedlinePgn>
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<ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0164493</ELocationID>
<Abstract><AbstractText>Resistance to soybean rust (SBR), caused by Phakopsora pachyrhizi Syd. & Syd., has been identified in many soybean germplasm accessions and is conferred by either dominant or recessive genes that have been mapped to six independent loci (Rpp1 -Rpp6), but No U.S. cultivars are resistant to SBR. The cultivar DT 2000 (PI 635999) has resistance to P. pachyrhizi isolates and field populations from the United States as well as Vietnam. A F6:7 recombinant inbred line (RIL) population derived from Williams 82 × DT 2000 was used to identify genomic regions associated with resistance to SBR in the field in Ha Noi, Vietnam, and in Quincy, Florida, in 2008. Bulked segregant analysis (BSA) was conducted using the soybean single nucleotide polymorphism (SNP) USLP 1.0 panel along with simple sequence repeat (SSR) markers to detect regions of the genome associated with resistance. BSA identified four BARC_SNP markers near the Rpp3 locus on chromosome (Chr.) 6. Genetic analysis identified an additional genomic region around the Rpp4 locus on Chr. 18 that was significantly associated with variation in the area under disease progress curve (AUDPC) values and sporulation in Vietnam. Molecular markers tightly linked to the DT 2000 resistance alleles on Chrs. 6 and 18 will be useful for marker-assisted selection and backcrossing in order to pyramid these genes with other available SBR resistance genes to develop new varieties with enhanced and durable resistance to SBR.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vuong</LastName>
<ForeName>Tri D</ForeName>
<Initials>TD</Initials>
<AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, Missouri, United States of America.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Walker</LastName>
<ForeName>David R</ForeName>
<Initials>DR</Initials>
<AffiliationInfo><Affiliation>Soybean/Maize Germplasm, Pathology, and Genetics Research Unit, USDA-ARS, and Department of Crop Sciences, University of Illinois, Urbana, Illinois,United States of America.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nguyen</LastName>
<ForeName>Binh T</ForeName>
<Initials>BT</Initials>
<AffiliationInfo><Affiliation>Plant Protection Research Institute (PPRI), Ha Noi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nguyen</LastName>
<ForeName>Tuyet T</ForeName>
<Initials>TT</Initials>
<AffiliationInfo><Affiliation>Plant Protection Research Institute (PPRI), Ha Noi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Dinh</LastName>
<ForeName>Hoan X</ForeName>
<Initials>HX</Initials>
<AffiliationInfo><Affiliation>Plant Protection Research Institute (PPRI), Ha Noi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hyten</LastName>
<ForeName>David L</ForeName>
<Initials>DL</Initials>
<AffiliationInfo><Affiliation>Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, United States of America.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cregan</LastName>
<ForeName>Perry B</ForeName>
<Initials>PB</Initials>
<AffiliationInfo><Affiliation>Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, United States of America.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sleper</LastName>
<ForeName>David A</ForeName>
<Initials>DA</Initials>
<AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, Missouri, United States of America.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lee</LastName>
<ForeName>Jeong D</ForeName>
<Initials>JD</Initials>
<AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Portageville, Missouri, United States of America.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shannon</LastName>
<ForeName>James G</ForeName>
<Initials>JG</Initials>
<AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, Missouri, United States of America.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nguyen</LastName>
<ForeName>Henry T</ForeName>
<Initials>HT</Initials>
<AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, Missouri, United States of America.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2016</Year>
<Month>12</Month>
<Day>09</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>PLoS One</MedlineTA>
<NlmUniqueID>101285081</NlmUniqueID>
<ISSNLinking>1932-6203</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000483" MajorTopicYN="N">Alleles</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D056426" MajorTopicYN="N">Genetic Loci</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000067563" MajorTopicYN="N">Phakopsora pachyrhizi</DescriptorName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013025" MajorTopicYN="N">Soybeans</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013172" MajorTopicYN="N">Spores, Fungal</DescriptorName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
</MeshHeadingList>
<CoiStatement>The authors declare that they have no conflict of interests.</CoiStatement>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year>
<Month>06</Month>
<Day>24</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2016</Year>
<Month>09</Month>
<Day>26</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2016</Year>
<Month>12</Month>
<Day>10</Day>
<Hour>6</Hour>
<Minute>0</Minute>
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<Day>6</Day>
<Hour>6</Hour>
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<PublicationStatus>epublish</PublicationStatus>
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<ArticleId IdType="pii">PONE-D-16-25426</ArticleId>
<ArticleId IdType="pmc">PMC5147787</ArticleId>
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<affiliations><list><country><li>Viêt Nam</li>
<li>États-Unis</li>
</country>
<region><li>Illinois</li>
<li>Maryland</li>
<li>Missouri (État)</li>
</region>
</list>
<tree><country name="États-Unis"><region name="Missouri (État)"><name sortKey="Vuong, Tri D" sort="Vuong, Tri D" uniqKey="Vuong T" first="Tri D" last="Vuong">Tri D. Vuong</name>
</region>
<name sortKey="Cregan, Perry B" sort="Cregan, Perry B" uniqKey="Cregan P" first="Perry B" last="Cregan">Perry B. Cregan</name>
<name sortKey="Hyten, David L" sort="Hyten, David L" uniqKey="Hyten D" first="David L" last="Hyten">David L. Hyten</name>
<name sortKey="Lee, Jeong D" sort="Lee, Jeong D" uniqKey="Lee J" first="Jeong D" last="Lee">Jeong D. Lee</name>
<name sortKey="Nguyen, Henry T" sort="Nguyen, Henry T" uniqKey="Nguyen H" first="Henry T" last="Nguyen">Henry T. Nguyen</name>
<name sortKey="Shannon, James G" sort="Shannon, James G" uniqKey="Shannon J" first="James G" last="Shannon">James G. Shannon</name>
<name sortKey="Sleper, David A" sort="Sleper, David A" uniqKey="Sleper D" first="David A" last="Sleper">David A. Sleper</name>
<name sortKey="Walker, David R" sort="Walker, David R" uniqKey="Walker D" first="David R" last="Walker">David R. Walker</name>
</country>
<country name="Viêt Nam"><noRegion><name sortKey="Nguyen, Binh T" sort="Nguyen, Binh T" uniqKey="Nguyen B" first="Binh T" last="Nguyen">Binh T. Nguyen</name>
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<name sortKey="Dinh, Hoan X" sort="Dinh, Hoan X" uniqKey="Dinh H" first="Hoan X" last="Dinh">Hoan X. Dinh</name>
<name sortKey="Nguyen, Tuyet T" sort="Nguyen, Tuyet T" uniqKey="Nguyen T" first="Tuyet T" last="Nguyen">Tuyet T. Nguyen</name>
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Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

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